Top 10 Hotels in Rookery Bay National Estuarine Research Reserve (from $58) 2026 - Competitive Prices

An aerial view of a coastal area with dense vegetation and a sandy beach.

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Our top choices for Rookery Bay National Estuarine Research Reserve hotels

A resort pool area with a view of the beach and ocean at sunset.

An outdoor dining area with round tables, clear chairs, and teal tablecloths.

A spacious lobby with a central table, large windows with a view of a pool and palm trees, and a modern chandelier.

A bar area with a view of the ocean, wicker chairs, and a large TV screen.

1. Hilton Marco Island Beach Resort and Spa

South End

Robert

$226 nightly

$251 total

Sep 8 - Sep 9

Total with taxes and fees

An indoor water park with a large pool, water slides, and various play structures.

A hotel with a central courtyard, multiple parking lots, and a large building with a prominent entrance.

A hotel room with a bed, a leather chair, a small table, a lamp, and a window with curtains.

A hotel room with a dining table, red chairs, a sofa, a TV, a lamp, and a view of the outdoors.

2. Great Wolf Lodge Naples

Rural Estates

Luis

$183 nightly

$203 total

Sep 8 - Sep 9

Total with taxes and fees

A pier extending into the ocean with overwater bungalows.

A spacious lobby with a high ceiling, multiple seating areas, and a central open space.

A waterfront hotel with multiple balconies, a marina with boats, and lush greenery.

A wooden deck extending over water with a sunset in the background, a palm tree, and a building with balconies.

3. Hyatt House Naples/5th Avenue

Old Naples

Ivelisse

$144 nightly

$160 total

Sep 16 - Sep 17

Total with taxes and fees

A balcony with a table and chairs, overlooking a beach.

A spacious lobby with a high ceiling, chandeliers, and a reception area.

A resort with a pool, beach, and ocean view.

A hotel room with a large window offering a view of the beach and ocean.

4. Marco Beach Ocean Suites

South End

Leonel

$208 nightly

$231 total

Sep 3 - Sep 4

Total with taxes and fees

A bar area with wooden chairs, a bar counter, and a tropical-themed decor including a thatched ceiling and a sign with a lime slice.

A fire pit surrounded by blue chairs in an outdoor patio area with tropical plants and a white wall in the background.

A hotel room with a bed, a red pillow with the word "WANDERER," and a large painting of a tropical island on the wall.

A poolside bar with a tropical theme, including a thatched roof and a lime sign.

5. Compass by Margaritaville Hotel Naples

Central Naples

Deborah

$115 nightly

$128 total

Sep 17 - Sep 18

Total with taxes and fees

A pool area with lounge chairs and umbrellas, surrounded by palm trees.

A modern hallway with a wooden floor, large potted plants, and a view of a sunset through large windows.

A modern bar area with a long counter, white bar stools, and ceiling fans.

A restaurant with wooden tables, a floral bench, and hanging lights.

6. The Perry Hotel Naples

Naples

Jairo

$149 nightly

$166 total

Sep 3 - Sep 4

Total with taxes and fees

A pool with a waterfall feature, surrounded by palm trees and lounge chairs.

A balcony with a table, chairs, and a bottle of wine.

An aerial view of a beach with a boat docked on the right, a blue umbrella, and people playing in the sand.

A marina with boats docked, a waterfront building with balconies, and a sunset sky.

7. Naples Bay Resort & Marina

Oyster Bay

Daniela

$275 nightly

$299 total

Sep 3 - Sep 4

Total with taxes and fees

A hotel with a pool, palm trees, and a lit-up building at dusk.

A restaurant with tables set for dining, large windows offering a view of the sunset over the ocean, and hanging pendant lights.

A beach with white sand and a clear blue sky. There are two white beach umbrellas and two lounge chairs.

A beachside lounge with wicker furniture, a thatched roof, and a view of a high-rise hotel in the background.

8. JW Marriott Marco Island Beach Resort

South End

thomas

$599 nightly

$664 total

Sep 3 - Sep 4

Total with taxes and fees

A spacious lobby with a central chandelier, seating areas, and a large decorative rug.

A formal outdoor dining area with round tables set for a meal, string lights overhead, and a building with arched windows in the background.

A hotel with a symmetrical facade, palm trees, and two flags.

A lobby with a bar area, seating, and a patterned floor.

9. Hilton Naples

Park Shore

mohammed

$122 nightly

$136 total

Sep 13 - Sep 14

Total with taxes and fees

An outdoor bar area with bamboo ceiling beams, multiple tables and chairs, and a TV screen.

An outdoor patio with tables and chairs, umbrellas, and potted plants.

A spacious lobby with a high ceiling, large windows, and a variety of seating arrangements including sofas and armchairs.

A modern bedroom with a large bed, a sofa, a nightstand, and a view of the city.

10. Bayfront Inn Fifth Avenue

Redevelopment Area

Carlos

$114 nightly

$127 total

Sep 3 - Sep 4

Total with taxes and fees

A garden pathway with palm trees, red flowers, and a thatched-roof structure.

A pool area with lounge chairs and a view of a lake.

A balcony with a view of a calm lake, surrounded by greenery and houses.

A modern kitchen with stainless steel appliances, a central island, and a dining area with a sofa and coffee table.

11. Marco Island Lakeside Inn

Marco Island

Marlene

$95 nightly

$105 total

Sep 3 - Sep 4

Total with taxes and fees

A hotel entrance with a covered walkway, palm trees, and a sign for 'CULTA INN & SUITES'.

A covered garden area with a central fountain, surrounded by palm trees and flowering plants.

A hotel room with two beds, a desk, a chair, a TV, and a large window with curtains.

A hotel lobby with a reception desk, seating area with chairs, and a large window with blinds.

12. La Quinta Inn & Suites by Wyndham Naples Downtown

East Naples

Noris

$69 nightly

$77 total

Sep 20 - Sep 21

Total with taxes and fees

A balcony with a view of the beach, white railings, and a lounge chair with towels.

An outdoor wedding venue with round tables, chairs, and umbrellas, set against a backdrop of palm trees and a view of the sea.

A beach with white sand, palm trees, and lounge chairs with umbrellas.

A bar area with wooden furniture, a television screen, and shelves of liquor bottles.

13. LaPlaya Beach & Golf Resort - A Noble House Resort

Vanderbilt Beach

Christina

$472 nightly

$523 total

Sep 8 - Sep 9

Total with taxes and fees

A wooden deck with lounge chairs and a table, a pool, and a building with a balcony.

An aerial view of a waterfront property with a swimming pool, outdoor seating, and a dock.

A hotel room with a bed, a desk, and a chair.

An aerial view of a waterfront property with a large building featuring multiple balconies and a dock extending into the water.

14. The Boat House

Olde Marco

Adrian

$127 nightly

$141 total

Sep 28 - Sep 29

Total with taxes and fees

A balcony with a view of the beach, a pool, and a dining area with outdoor furniture.

A modern living room with a flat-screen TV, grey sofas, a wooden dining table, and a large window offering a view of the city and ocean.

A swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a hotel building.

A modern hotel complex with multiple high-rise buildings, a central courtyard with a swimming pool, and lush greenery surrounding the property.

15. Marriott's Crystal Shores

South End

KELERYN M

$599 nightly

$665 total

Sep 3 - Sep 4

Total with taxes and fees

A hotel with a large pool, multiple balconies, and outdoor seating areas.

A beach cabana with striped bedding and a red blanket, a pineapple drink, and a beach umbrella.

A large hotel with multiple swimming pools, a central courtyard, and a view of the surrounding landscape.

A bar area with a curved ceiling, bar stools, and a counter with bottles.

16. Naples Grande Beach Resort

Pelican Bay

Peter

A cozy outdoor seating area with a white bench and potted plants, a sign for 'Bijoux' gelateria, and a brick pathway.

A poolside area with lounge chairs and umbrellas, surrounded by palm trees.

A bar area with wooden bar counters, stools, and a variety of bottles and glasses.

A gated entrance to a pool area with a sign indicating pool hours and restrictions.

17. Olde Marco Island Inn and Suites

Olde Marco

Clayton

$234 nightly

$260 total

Sep 21 - Sep 22

Total with taxes and fees

A modern hotel lobby with a dining area, seating arrangements, and large potted plants.

A modern living room with a sectional sofa, glass coffee table, and patterned chairs.

A modern living room with a sofa, coffee table, and a dining area.

A spacious restaurant with high ceilings, wooden paneling, and modern lighting fixtures.

18. AC Hotel by Marriott Naples 5th Avenue

Redevelopment Area

Marcus

$159 nightly

$176 total

Sep 7 - Sep 8

Total with taxes and fees

A swimming pool with a small island, lounge chairs, and a grassy area.

A rooftop lounge area with blue-striped sofas and tables, a pool with sun loungers, and umbrellas.

A modern restaurant with leather booths and tables, a brick-patterned wall, and a wine rack.

A spacious lobby with a high ceiling, a grand chandelier, a staircase, and a reception area with a glass coffee table and white sofas.

19. Inn on Fifth

Old Naples

Nail

$338 nightly

$375 total

Sep 7 - Sep 8

Total with taxes and fees

A swimming pool with a tiled edge, surrounded by palm trees and a red umbrella.

A spacious indoor area with multiple seating arrangements, including chairs and tables, and large windows offering views of the outside.

A modern kitchen with a built-in microwave, coffee maker, and dishwasher.

An outdoor patio area with wicker furniture, a round table, and a view of the evening sky.

20. Home2 Suites Naples I-75 Pine Ridge Road, FL

Naples

Shannon

$122 nightly

$136 total

Sep 8 - Sep 9

Total with taxes and fees

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Stay near popular Rookery Bay National Estuarine Research Reserve attractions

South Naples and Marco Island Beaches

9.2/10 (82 reviews)

Why not spend a lazy afternoon at South Naples and Marco Island Beaches during your trip to Naples? Make time to visit the area's shops, or simply enjoy its top-notch restaurants.

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Cannon Beach

Why not spend a lazy afternoon at Cannon Beach during your trip to Naples? Amble around the area's beautiful beaches or seek out the golf courses.

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Rebecca's Cove Beach Park and Landing

Why not spend a lazy afternoon at Rebecca's Cove Beach Park and Landing during your trip to Naples? Wander the beautiful beaches or discover the area's beautiful sunsets.

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Susan's Beach Park and Landing

Why not spend a lazy afternoon at Susan's Beach Park and Landing during your trip to Naples? Stroll along the area's beautiful beaches, or simply savor its top-notch restaurants.

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Briggs Nature Center

10.0/10 (1 review)

Explore the great outdoors at Briggs Nature Center and enjoy the beautiful sunsets during your trip to Naples. Wander the beautiful beaches and seaside in this family-friendly area.

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Learn more about Rookery Bay National Estuarine Research Reserve

Explore attractions like Hideaway Beach and South Naples and Marco Island Beaches as you discover things to see and do in Rookery Bay National Estuarine Research Reserve.

See all hotels in Rookery Bay National Estuarine Research Reserve

Top Rookery Bay National Estuarine Research Reserve Hotel Reviews

Naples Bay Resort & Marina

10/10 Excellent

"Great"

Hilton Naples

10/10 Excellent

"All was good!"

Compass by Margaritaville Hotel Naples

10/10 Excellent

"I've been going to this hotel for over 4 years and it's still as good as new. Thank you all for your hospitality."

Bayfront Inn Fifth Avenue

10/10 Excellent

"1"

JW Marriott Marco Island Beach Resort

10/10 Excellent

"The staff is extremely helpful."

Trianon Bonita Bay

10/10 Excellent

"Promote amenities in the pool bar"

Naples Beach Club, A Four Seasons Resort

10/10 Excellent

"Outstanding massage"

Great Wolf Lodge Naples

8/10 Good

"Overall, I thought the hotel was very good, and I was satisfied with my stay. However, I was extremely disappointed with the price I paid through Expedia. I paid almost $800 for the room, not including breakfast, while the hotel itself quoted the same room at $488.38, including taxes and an additional fee. In other words, I ended up paying significantly more simply because I made my reservation through Expedia. While I enjoyed the hotel and the stay itself, the large price difference made me feel that I overpaid considerably for booking through Expedia."

LaPlaya Beach & Golf Resort - A Noble House Resort

8/10 Good

"They make changes to your card in advance without you being notified of"

More cheap stays in Rookery Bay National Estuarine Research Reserve

Echo Suites Extended Stay By Wyndham Naples

3670 Income Lane Naples FL

$67 nightly

$75 total

Sep 13 - Sep 14

Total with taxes and fees

8.4/10 Very Good! (406 reviews)

Red Roof Inn PLUS+ & Suites Naples Downtown-5th Ave S

1925 Davis Blvd Naples FL

$69 nightly

$77 total

Sep 30 - Oct 1

Total with taxes and fees

Days Inn & Suites by Wyndham Bonita Springs North Naples

27991 Oakland Drive Bonita Springs FL

$75 nightly

$83 total

Sep 19 - Sep 20

Total with taxes and fees

Holiday Inn Express & Suites Naples North - Bonita Springs by IHG

27891 Crown Lake Blvd Bonita Springs FL

$84 nightly

$94 total

Sep 6 - Sep 7

Total with taxes and fees

Holiday Inn Express Hotel Naples Downtown - 5th Avenue

Naples FL

$102 nightly

$113 total

Sep 7 - Sep 8

Total with taxes and fees

Marco Beach Ocean Suites

480 S Collier Blvd Marco Island FL

$208 nightly

$231 total

Sep 3 - Sep 4

Total with taxes and fees

Find hotels in Rookery Bay National Estuarine Research Reserve, FL from $58

Upfront pricing

Treat yourself

Be picky

Go beyond your typical stay in Rookery Bay National Estuarine Research Reserve

Check prices for these dates

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Our top choices for Rookery Bay National Estuarine Research Reserve hotels

1. Hilton Marco Island Beach Resort and Spa

2. Great Wolf Lodge Naples

3. Hyatt House Naples/5th Avenue

4. Marco Beach Ocean Suites

5. Compass by Margaritaville Hotel Naples

6. The Perry Hotel Naples

7. Naples Bay Resort & Marina

8. JW Marriott Marco Island Beach Resort

9. Hilton Naples

10. Bayfront Inn Fifth Avenue

11. Marco Island Lakeside Inn

12. La Quinta Inn & Suites by Wyndham Naples Downtown

13. LaPlaya Beach & Golf Resort - A Noble House Resort

14. The Boat House

15. Marriott's Crystal Shores

16. Naples Grande Beach Resort

17. Olde Marco Island Inn and Suites

18. AC Hotel by Marriott Naples 5th Avenue

19. Inn on Fifth

20. Home2 Suites Naples I-75 Pine Ridge Road, FL

Stay near popular Rookery Bay National Estuarine Research Reserve attractions

South Naples and Marco Island Beaches

Cannon Beach

Rebecca's Cove Beach Park and Landing

Susan's Beach Park and Landing

Briggs Nature Center

Learn more about Rookery Bay National Estuarine Research Reserve

Top Rookery Bay National Estuarine Research Reserve Hotel Reviews

Naples Bay Resort & Marina

Hilton Naples

Compass by Margaritaville Hotel Naples

Bayfront Inn Fifth Avenue

JW Marriott Marco Island Beach Resort

Trianon Bonita Bay

Naples Beach Club, A Four Seasons Resort

Great Wolf Lodge Naples

LaPlaya Beach & Golf Resort - A Noble House Resort

More cheap stays in Rookery Bay National Estuarine Research Reserve

Echo Suites Extended Stay By Wyndham Naples

Red Roof Inn PLUS+ & Suites Naples Downtown-5th Ave S

Days Inn & Suites by Wyndham Bonita Springs North Naples

Holiday Inn Express & Suites Naples North - Bonita Springs by IHG

Holiday Inn Express Hotel Naples Downtown - 5th Avenue

Marco Beach Ocean Suites

Hotels in Rookery Bay National Estuarine Research Reserve with star-rating

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