Top 10 Hotels in Rookery Bay National Estuarine Research Reserve (from $70) 2026 - Competitive Prices

An aerial view of a coastal area with dense vegetation and a sandy beach.

Go beyond your typical stay in Rookery Bay National Estuarine Research Reserve

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Our top choices for Rookery Bay National Estuarine Research Reserve hotels

A resort pool area with a view of the beach and ocean at sunset.

An outdoor dining area with round tables, clear chairs, and teal tablecloths.

A wooden deck with a table and chairs, surrounded by lush greenery and palm trees, overlooking a beach.

A spacious lobby with a central table, large windows with a view of a pool and palm trees, and a modern chandelier.

1. Hilton Marco Island Beach Resort and Spa

South End

Robert

$238 nightly

$264 total

Oct 4 - Oct 5

Total with taxes and fees

An indoor water park with a large pool, water slides, and various play structures.

A hotel room with a dining table, red chairs, a sofa, a TV, a lamp, and a view of the outdoors.

An outdoor bar area with a counter, seating, and a sign that reads "OUTPOST BAR".

A hotel room with a bed, a leather chair, a small table, a lamp, and a window with curtains.

2. Great Wolf Lodge Naples

Rural Estates

Dwayne

$171 nightly

$190 total

Sep 29 - Sep 30

Total with taxes and fees

A resort pool with lounge chairs and palm trees, surrounded by a marina and a body of water.

A waterfront hotel with multiple balconies, a marina with boats, and lush greenery.

A wooden deck extending over water with a sunset in the background, a palm tree, and a building with balconies.

3. Hyatt House Naples/5th Avenue

Old Naples

Tanya

$164 nightly

$182 total

Sep 27 - Sep 28

Total with taxes and fees

A balcony with a table and chairs, overlooking a beach.

A hotel room with a large window offering a view of the beach and ocean.

A spacious lobby with a high ceiling, chandeliers, and a reception area.

A sign for Marco Beach Ocean Resort Club Regency with a crest, surrounded by palm trees and red flowers.

4. Marco Beach Ocean Suites

South End

Ian

$160 nightly

$178 total

Sep 28 - Sep 29

Total with taxes and fees

A bar area with wooden chairs, a bar counter, and a tropical-themed decor including a thatched ceiling and a sign with a lime slice.

A kitchen area with a wooden cabinet, a coffee station, and a large painting of a coastal landscape.

A fire pit surrounded by blue chairs in an outdoor patio area with tropical plants and a white wall in the background.

A hotel room with a bed, a red pillow with the word "WANDERER," and a large painting of a tropical island on the wall.

5. Compass by Margaritaville Hotel Naples

Central Naples

Lucy Thatcher

$135 nightly

$150 total

Oct 20 - Oct 21

Total with taxes and fees

A pool area with lounge chairs and umbrellas, surrounded by palm trees.

A modern hallway with a wooden floor, large potted plants, and a view of a sunset through large windows.

A lobby with a rustic brick wall, hanging lights, a wooden reception desk, and a wooden floor.

A restaurant with wooden tables, a floral bench, and hanging lights.

6. The Perry Hotel Naples

Naples

Jairo

$162 nightly

$180 total

Sep 29 - Sep 30

Total with taxes and fees

A pool with a waterfall feature, surrounded by palm trees and lounge chairs.

An aerial view of a beach with a boat docked on the right, a blue umbrella, and people playing in the sand.

A balcony with a table, chairs, and a bottle of wine.

A modern hotel room with a sofa, armchairs, a dining table, and a large window with a view of palm trees.

7. Naples Bay Resort & Marina

Oyster Bay

Victor

$183 nightly

$203 total

Oct 8 - Oct 9

Total with taxes and fees

A hotel with a pool, palm trees, and a lit-up building at dusk.

A restaurant with tables set for dining, large windows offering a view of the sunset over the ocean, and hanging pendant lights.

A beachside lounge with wicker furniture, a thatched roof, and a view of a high-rise hotel in the background.

A beach with white sand and a clear blue sky. There are two white beach umbrellas and two lounge chairs.

8. JW Marriott Marco Island Beach Resort

South End

Sigrid

$649 nightly

$720 total

Sep 25 - Sep 26

Total with taxes and fees

A spacious lobby with a central chandelier, seating areas, and a large decorative rug.

A swimming pool with a stone waterfall feature, surrounded by lounge chairs and palm trees.

A formal outdoor dining area with round tables set for a meal, string lights overhead, and a building with arched windows in the background.

A hotel with a symmetrical facade, palm trees, and two flags.

9. Hilton Naples

Park Shore

Roshelle

$137 nightly

$152 total

Sep 27 - Sep 28

Total with taxes and fees

An outdoor bar area with bamboo ceiling beams, multiple tables and chairs, and a TV screen.

A spacious lobby with a high ceiling, large windows, and a variety of seating arrangements including sofas and armchairs.

An outdoor patio with tables and chairs, umbrellas, and potted plants.

A marina with boats docked, a waterfront promenade with outdoor seating, and multi-story buildings in the background.

10. Bayfront Inn Fifth Avenue

Redevelopment Area

Carlos

$100 nightly

$111 total

Sep 28 - Sep 29

Total with taxes and fees

A garden pathway with palm trees, red flowers, and a thatched-roof structure.

A balcony with a view of a calm lake, surrounded by greenery and houses.

A kitchen with wooden cabinets, a stainless steel refrigerator, a microwave, and a sink.

A modern kitchen with stainless steel appliances, a central island, and a dining area with a sofa and coffee table.

11. Marco Island Lakeside Inn

Marco Island

Rafael

$90 nightly

$100 total

Sep 27 - Sep 28

Total with taxes and fees

A hotel entrance with a covered walkway, palm trees, and a sign for 'CULTA INN & SUITES'.

A hotel room with two beds, a desk, a chair, a TV, and a large window with curtains.

A covered garden area with a central fountain, surrounded by palm trees and flowering plants.

A hotel lobby with a reception desk, seating area with chairs, and a large window with blinds.

12. La Quinta Inn & Suites by Wyndham Naples Downtown

East Naples

Noris

$82 nightly

$91 total

Oct 4 - Oct 5

Total with taxes and fees

A balcony with a view of the beach, white railings, and a lounge chair with towels.

A pool area with lounge chairs and umbrellas, surrounded by palm trees and a building with a red-tiled roof.

A bar area with wooden furniture, a television screen, and shelves of liquor bottles.

An outdoor wedding venue with round tables, chairs, and umbrellas, set against a backdrop of palm trees and a view of the sea.

13. LaPlaya Beach & Golf Resort - A Noble House Resort

Vanderbilt Beach

Christina

$516 nightly

$573 total

Sep 29 - Sep 30

Total with taxes and fees

A wooden deck with lounge chairs and a table, a pool, and a building with a balcony.

A kitchen with a dining table, chairs, a microwave, and a coffee maker.

An aerial view of a waterfront property with a swimming pool, outdoor seating, and a dock.

An aerial view of a waterfront property with a large building featuring multiple balconies and a dock extending into the water.

14. The Boat House

Olde Marco

Jaci

$127 nightly

$141 total

Sep 27 - Sep 28

Total with taxes and fees

A balcony with a view of the beach, a pool, and a dining area with outdoor furniture.

A modern hotel complex with multiple high-rise buildings, a central courtyard with a swimming pool, and lush greenery surrounding the property.

A beach with two blue lounge chairs and a blue umbrella.

A swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a hotel building.

15. Marriott's Crystal Shores

South End

KELERYN M

$492 nightly

$546 total

Sep 29 - Sep 30

Total with taxes and fees

A hotel with a large pool, multiple balconies, and outdoor seating areas.

A beach with striped beach umbrellas and lounge chairs.

A bar area with a curved ceiling, bar stools, and a counter with bottles.

A large hotel with multiple swimming pools, a central courtyard, and a view of the surrounding landscape.

16. Signia Hilton Naples Grande Beach Resort

Pelican Bay

Peter

A cozy outdoor seating area with a white bench and potted plants, a sign for 'Bijoux' gelateria, and a brick pathway.

A poolside area with lounge chairs and umbrellas, surrounded by palm trees.

A gated entrance to a pool area with a sign indicating pool hours and restrictions.

A bar area with wooden bar counters, stools, and a variety of bottles and glasses.

17. Olde Marco Island Inn and Suites

Olde Marco

Scott

$248 nightly

$275 total

Oct 11 - Oct 12

Total with taxes and fees

A modern hotel lobby with a dining area, seating arrangements, and large potted plants.

A modern living room with a sofa, coffee table, and a dining area.

A modern hotel lobby with a central bar area, seating arrangements, and a view of the cityscape.

A spacious restaurant with high ceilings, wooden paneling, and modern lighting fixtures.

18. AC Hotel by Marriott Naples 5th Avenue

Redevelopment Area

Michelle

$179 nightly

$199 total

Sep 27 - Sep 28

Total with taxes and fees

A swimming pool with a small island, lounge chairs, and a grassy area.

A rooftop lounge area with blue-striped sofas and tables, a pool with sun loungers, and umbrellas.

A modern restaurant with leather booths and tables, a brick-patterned wall, and a wine rack.

A beach setting with a striped canopy tent, two striped chairs, a table with a drink, and a bag on the sand.

19. Inn on Fifth

Old Naples

Chad and Alyson

$381 nightly

$423 total

Sep 29 - Sep 30

Total with taxes and fees

A swimming pool with a tiled edge, surrounded by palm trees and a red umbrella.

A spacious indoor area with multiple seating arrangements, including chairs and tables, and large windows offering views of the outside.

A modern hotel room with a kitchenette, a bed, a desk with a chair, and a large window with a view of greenery.

An outdoor patio area with wicker furniture, a round table, and a view of the evening sky.

20. Home2 Suites Naples I-75 Pine Ridge Road, FL

Naples

Karen

$128 nightly

$142 total

Sep 27 - Sep 28

Total with taxes and fees

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Stay near popular Rookery Bay National Estuarine Research Reserve attractions

South Naples and Marco Island Beaches

9.2/10 (82 reviews)

Why not spend a lazy afternoon at South Naples and Marco Island Beaches during your trip to Naples? Make time to visit the area's shops, or simply enjoy its top-notch restaurants.

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Cannon Beach

Why not spend a lazy afternoon at Cannon Beach during your trip to Naples? Amble around the area's beautiful beaches or seek out the golf courses.

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Rebecca's Cove Beach Park and Landing

Why not spend a lazy afternoon at Rebecca's Cove Beach Park and Landing during your trip to Naples? Wander the beautiful beaches or discover the area's beautiful sunsets.

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Susan's Beach Park and Landing

Why not spend a lazy afternoon at Susan's Beach Park and Landing during your trip to Naples? Stroll along the area's beautiful beaches, or simply savor its top-notch restaurants.

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Briggs Nature Center

10.0/10 (1 review)

Explore the great outdoors at Briggs Nature Center and enjoy the beautiful sunsets during your trip to Naples. Wander the beautiful beaches and seaside in this family-friendly area.

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Learn more about Rookery Bay National Estuarine Research Reserve

Explore attractions like Hideaway Beach and South Naples and Marco Island Beaches as you discover things to see and do in Rookery Bay National Estuarine Research Reserve.

See all hotels in Rookery Bay National Estuarine Research Reserve

Top Rookery Bay National Estuarine Research Reserve Hotel Reviews

La Quinta Inn & Suites by Wyndham Naples Downtown

10/10 Excellent

"Perfect location, great staff, clean rooms and good breakfast"

The Perry Hotel Naples

10/10 Excellent

"Espectacular hotel! Hemos estado alli en dos ocasiones y me encanta. El servicio de Ferry y Shutlle Gratuito es un plus la playa hermosa, el.paseo en manglar hermoso vimos defines, celebramos aniversario y cumpleaños de mi hija y ya quiero volver. El personal del hotel muy amable, los conductores del ferry y del bus muy buenas personas, la Vista del balcon increíble al atardecer y amanecer, la.piscima todo. Solo falta mejores desayunos y que no desmejoren la comida de la piscina."

Fairways Inn of Naples

10/10 Excellent

"Todo perfecto desde el precio hasta la atención, limpieza,buen desayuno, atención personalizada en la recepción,café, galletas y agua de bienvenida.La instalación tiene todo lo necesario para estadías largas,el ambiente natural enamora,si tuviera que decir algo negativo sería el no poder estar más días, Felicidades a todo el colectivo de trabajo, volveré!!"

Hilton Marco Island Beach Resort and Spa

10/10 Excellent

"I normally don’t write reviews but I couldn’t be more impressed by this hotel. The room was very clean, well stocked, mattress was comfortable, and shower had a good water flow. Staff was very welcoming and accommodating to all are needs. The beach was clean. Just steps from the hotel. I like that they had multiple locations to enter and exit the hotel to get to the beach. Loved the on the beach alcohol cart. Bar was 100% on point. Very consistent drinks no matter which bartender made them and not watered down. Breakfast buffet was phenomenal. Lunch menu could have been better. Would have liked more appetizers. Sitting by the pool finger food for example. Dinner was great. Also there is restaurants literally right across the street, so convenient. Definitely will be staying here again!"

Marco Beach Ocean Suites

8/10 Good

"Nice room and location"

Compass by Margaritaville Hotel Naples

10/10 Excellent

"The hotel is wonderful; the pool area is spotless and well-organized, and the staff are incredibly polite and attentive. The breakfast is amazing—I highly recommend it. The cleanliness is impeccable."

Naples Beach Club, A Four Seasons Resort

10/10 Excellent

"Excellent!"

Naples Bay Resort & Marina

10/10 Excellent

"Rooms very spacious and clean. Most comfortable beds!!! Staff kind and helpful."

More cheap stays in Rookery Bay National Estuarine Research Reserve

Conty's Motel

11238 Tamiami Trail East Naples FL

$65 nightly

$72 total

Sep 25 - Sep 26

Total with taxes and fees

Red Roof Inn PLUS+ & Suites Naples Downtown-5th Ave S

1925 Davis Blvd Naples FL

$70 nightly

$78 total

Sep 28 - Sep 29

Total with taxes and fees

Best Western Naples Plaza Hotel

6400 Dudley Dr Naples FL

$79 nightly

$88 total

Sep 25 - Sep 26

Total with taxes and fees

8.8/10 Excellent! (1,000 reviews)

Hampton Inn & Suites Naples South

5146 Tamiami Trail East Naples FL

$93 nightly

$104 total

Oct 4 - Oct 5

Total with taxes and fees

9.8/10 Exceptional! (622 reviews)

Hampton Inn Naples Central

Naples FL

$94 nightly

$105 total

Oct 4 - Oct 5

Total with taxes and fees

Marco Beach Ocean Suites

480 S Collier Blvd Marco Island FL

$160 nightly

$178 total

Sep 28 - Sep 29

Total with taxes and fees

8.8/10 Excellent! (1,536 reviews)

Hotels in Rookery Bay National Estuarine Research Reserve with star-rating

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Find hotels in Rookery Bay National Estuarine Research Reserve, FL from $70

Go beyond your typical stay in Rookery Bay National Estuarine Research Reserve

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Our top choices for Rookery Bay National Estuarine Research Reserve hotels

1. Hilton Marco Island Beach Resort and Spa

2. Great Wolf Lodge Naples

3. Hyatt House Naples/5th Avenue

4. Marco Beach Ocean Suites

5. Compass by Margaritaville Hotel Naples

6. The Perry Hotel Naples

7. Naples Bay Resort & Marina

8. JW Marriott Marco Island Beach Resort

9. Hilton Naples

10. Bayfront Inn Fifth Avenue

11. Marco Island Lakeside Inn

12. La Quinta Inn & Suites by Wyndham Naples Downtown

13. LaPlaya Beach & Golf Resort - A Noble House Resort

14. The Boat House

15. Marriott's Crystal Shores

16. Signia Hilton Naples Grande Beach Resort

17. Olde Marco Island Inn and Suites

18. AC Hotel by Marriott Naples 5th Avenue

19. Inn on Fifth

20. Home2 Suites Naples I-75 Pine Ridge Road, FL

Stay near popular Rookery Bay National Estuarine Research Reserve attractions

South Naples and Marco Island Beaches

Cannon Beach

Rebecca's Cove Beach Park and Landing

Susan's Beach Park and Landing

Briggs Nature Center

Learn more about Rookery Bay National Estuarine Research Reserve

Top Rookery Bay National Estuarine Research Reserve Hotel Reviews

La Quinta Inn & Suites by Wyndham Naples Downtown

The Perry Hotel Naples

Fairways Inn of Naples

Hilton Marco Island Beach Resort and Spa

Marco Beach Ocean Suites

Compass by Margaritaville Hotel Naples

Naples Beach Club, A Four Seasons Resort

Naples Bay Resort & Marina

More cheap stays in Rookery Bay National Estuarine Research Reserve

Conty's Motel

Red Roof Inn PLUS+ & Suites Naples Downtown-5th Ave S

Best Western Naples Plaza Hotel

Hampton Inn & Suites Naples South

Hampton Inn Naples Central

Marco Beach Ocean Suites

Hotels in Rookery Bay National Estuarine Research Reserve with star-rating

Explore a world of travel with Expedia